http://bio.chip.org/mapper [url]

Interesting DB of TFBS, with new extensions to ENCODE regions and SNPs. Based on building HMMs from TRANSFAC and then running these against genomes.

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http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=retrieve&db=pubmed&list_uids=15608292&dopt=Abstract
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D91-7.   
The MAPPER database: a multi-genome catalog of putative transcription factor binding sites.
Marinescu VD, Kohane IS, Riva A.
http://bio.chip.org/mapper

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